java.lang.IndexOutOfBoundsException: Index: 0, Size: 0
at java.util.ArrayList.rangeCheck(ArrayList.java:638)
at java.util.ArrayList.get(ArrayList.java:414)
at com.dynamo.bob.bundle.BundleHelper.buildEngineRemote(BundleHelper.java:220)
at com.dynamo.bob.Project.buildEngine(Project.java:534)
at com.dynamo.cr.editor.handlers.SignHandler$SignRunnable.run(SignHandler.java:173)
at org.eclipse.jface.operation.ModalContext$ModalContextThread.run(ModalContext.java:121)
This has to with the latest update with native extensions, many apologies for this! We are working on a fix for this that should enter beta today, and stable on monday.
In the meantime please use the workaround @sicher presented.
Again, sorry for this!